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Taverna: Lessons in creating a workflow environment for the life sciences

机译:Taverna:为生命科学创建工作流环境的经验教训

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摘要

Life sciences research is based on individuals, often with diverse skills, assembled into research groups. These groups use their specialist expertise to address scientific problems. The in silico experiments undertaken by these research groups can be represented as workflows involving the co-ordinated use of analysis programs and information repositories that may be globally distributed. With regards to Grid computing, the requirements relate to the sharing of analysis and information resources rather than sharing computational power. The myGrid project has developed the Taverna Workbench for the composition and execution of workflows for the life sciences community. This experience paper describes lessons learnt during the development of Taverna. A common theme is the importance of understanding how workflows fit into the scientists' experimental context. The lessons reflect an evolving understanding of life scientists' requirements on a workflow environment, which is relevant to other areas of data intensive and exploratory science. Copyright © 2005 John Wiley & Sons, Ltd.
机译:生命科学研究的基础是通常具有不同技能的个人,这些人被组成研究小组。这些小组利用他们的专业知识来解决科学问题。这些研究小组进行的计算机模拟实验可以表示为工作流程,涉及协同使用的分析程序和信息库,这些程序和信息库可能在全球范围内分布。关于网格计算,要求涉及共享分析和信息资源,而不是共享计算能力。 myGrid项目开发了Taverna Workbench,用于组成和执行生命科学界的工作流。本经验文章介绍了在Taverna开发过程中获得的经验教训。一个共同的主题是理解工作流如何适合科学家的实验环境的重要性。这些课程反映了对生命科学家对工作流环境的要求的不断发展的了解,这与数据密集型和探索性科学的其他领域有关。版权所有©2005 John Wiley&Sons,Ltd.

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